Nucleic Acids Res 39:W155–W159īonnet E, He Y, Billiau K, Van de Peer Y (2010) TAPIR, a web server for the prediction of plant microRNA targets, including target mimics. PLoS One 2:e219ĭai X, Zhao PX (2011) psRNATarget: a plant small RNA target analysis server. BMC Genomics 15:348įahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC (2007) High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes. Srivastava PK, Moturu TR, Pandey P, Baldwin IT, Pandey SP (2014) A comparison of performance of plant miRNA target prediction tools and the characterization of features for genome-wide target prediction. Dev Biol 380:133–144Ĭhorostecki U, Crosa VA, Lodeyro AF, Bologna NG, Martin AP, Carrillo N, Schommer C, Palatnik JF (2012) Identification of new microRNA-regulated genes by conserved targeting in plant species. Luo Y, Guo Z, Li L (2013) Evolutionary conservation of microRNA regulatory programs in plant flower development. Plant Cell 26:741–753īrodersen P, Voinnet O (2009) Revisiting the principles of microRNA target recognition and mode of action. Liu Q, Wang F, Axtell MJ (2014) Analysis of complementarity requirements for plant microRNA targeting using a Nicotiana benthamiana quantitative transient assay. J Cell Physiol 231:303–313Īxtell MJ (2013) Classification and comparison of small RNAs from plants. Li C, Zhang B (2016) MicroRNAs in control of plant development. Plant Physiol 175:927–946įerdous J, Hussain SS, Shi BJ (2015) Role of microRNAs in plant drought tolerance. Pradhan M, Pandey P, Gase K, Sharaff M, Singh RK, Sethi A, Baldwin IT, Pandey SP (2017) Argonaute 8 (AGO8) mediates the elicitation of direct defenses against herbivory. Plant Physiol 150:1648–1655īozorov TA, Pandey SP, Dinh ST, Kim SG, Heinrich M, Gase K, Baldwin IT (2012) DICER-like proteins and their role in plant-herbivore interactions in Nicotiana attenuata. Pandey SP, Somssich IE (2009) The role of WRKY transcription factors in plant immunity. Pandey SP, Baldwin IT (2007) RNA-directed RNA polymerase 1 (RdR1) mediates the resistance of Nicotiana attenuata to herbivore attack in nature. Key wordsĪxtell MJ, Meyers BC (2018) Revisiting criteria for plant MicroRNA annotation in the era of big data. Here, we describe an in silico procedure for studying miRNA-mediated interactions in plants, which is based on the fact that canonical miRNA-target sites are highly complementary, the miRNAs negatively regulate the expression of their target genes, and miRNAs may form regulatory networks as one miRNA may target more than one transcript and vice versa to modulate and fine-tune expression of the genome. Although several tools have been developed for predicting miRNA targets in model plants, genome-wide analysis of miRNA targets is still a challenge for non-model species that lack dedicated tools. Extensive research is being made to study genome-wide miRNA-mediated regulation of gene expression, which has resulted in the development of many tools for in silico prediction of miRNA targets. In plants, miRNAs target the transcripts in a highly complementary sequence-dependent manner. MicroRNAs (miRNAs) are the central component of an important layer of regulation of gene expression at posttranscriptional level.
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